Domain > mobileogdb.flsi.cloud.vt.edu

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Date	IP Address
2022-09-12	3.19.20.250 (ClassC)
2025-01-14	3.22.84.191 (ClassC)

HTTP/1.1 200 OKDate: Tue, 14 Jan 2025 12:07:03 GMTContent-Type: text/html; charsetutf-8Transfer-Encoding: chunkedConnection: keep-aliveX-Frame-Options: SAMEORIGINX-XSS-Protection: 1; modeblockX-Content-Type-Options: nosniffX-Download-Options: noopenX-Permitted-Cross-Domain-Policies: noneReferrer-Policy: strict-origin-when-cross-originVary: AcceptETag: W/c658c86fde88e9424d58b0676473e6a5Cache-Control: max-age0, private, must-revalidateSet-Cookie: _mobileogdb_session6ysZT7LaXr%2B%2FHl2af9xXzldjBbcdh2NWv5MicJRE5bUKpGqAVqQg148xSd0P8FVBginKrqPH4nkz4kapDmxdohWduSuIsISUz3goMWnoAESUd0%2FlKLDN%2B%2F4AVNyRF85oO8OjF8%2FhuckaHIqRehQ%3D--Vk5iURTr6qti%2BRvz--nGW95nSKRV0%2FKHF387fE8w%3D%3D; path/; HttpOnlyX-Request-Id: 0a599e64-7243-40a3-bbea-fb4cf8dc7bc7X-Runtime: 0.142058

!DOCTYPE html>html>  head>    title>mobileOG-db/title>    link relshortcut icon href/favicon.ico>    meta nameviewport contentwidthdevice-width, initial-scale1.0 />    meta http-equivX-UA-Compatible contentIEedge/>    meta nameformat-detection contenttelephoneno/>    meta namecsrf-param contentauthenticity_token />meta namecsrf-token content6aTD8+jWbxWeqA3hQ3EesUy7ZISwM0vFxDxPpsPM/xcrKaMQ9Z1H/sYtYZM8nydXkU3GnZddYjKkOrjdBMs1pw />        link relstylesheet mediaall href/dev-assets/application.debug-ee2e695ac705e7f24bff58f4d38474ba5eff18b8cb0958d4f0867c29a552c8dd.css data-turbolinks-trackreload />    script src/dev-assets/application.debug-c3a507eb25ce4bb933cb6216447a9b69e950c1211502c6206ada977935c64beb.js data-turbolinks-trackreload>/script>    script defer srchttps://www.assets.cms.vt.edu/font-awesome/archives-pro/5.6.latest/js/all.min.js x-cq-linkcheckerskip>/script>    script srchttps://www.assets.cms.vt.edu/bootstrap/bootstrap-responsive-tabs/js/responsive-tabs.js>/script>  /head>  body idvt_theme_one classvt-home norightcol vt-edu-home>    div classheader>!-- ///////////////////////////////////////////// -->!-- EYEBROW -->!-- ///////////////////////////////////////////// -->  div classrow vt-one-preHeader>    div classvt-universal-access>      button onclickaccessToggle() classvt-access-toggle aria-labelledbyvt_universal_access_label>        img alt srchttps://www.assets.cms.vt.edu/images/accessibility_icon_white.svg classvt-access-toggle-icon vt-transparent-bg focusablefalse aria-hiddentrue/>        span classsr-only>Universal Access Toggle/span>      /button>      div roletooltip idvt_universal_access_label classvt-universal-access-label>Universal Access/div>      div roledialog idvt_access_dialog aria-labelledbyaccess_dialog_label aria-describedbyaccess_dialog_label aria-modaltrue classvt-access-dialog-wrapper aria-hiddentrue>        div classvt-access-dialog>          button onclickaccessToggle() classvt-access-dialog-close tabindex-1 aria-labelClose Universal Access dialog>            span classfar fa-times focusablefalse aria-hiddentrue>/span>            span classsr-only>Close Universal Access dialog/span>          /button>          span idvt_access_dialog_label classvt-access-dialog-label>Universal Access Options/span>          ul iduaRender classvt-access-options>          /ul>        /div> !-- end vt-access-dialog -->      /div> !-- end vt_access_dialog -->    /div> !-- end vt-universal-access -->  /div> !-- end vt-one-preHeader -->!-- ///////////////////////////////////////////// -->!-- END EYEBROW -->!-- ///////////////////////////////////////////// -->!-- ///////////////////////////////////////////// -->!-- HEADER -->!-- ///////////////////////////////////////////// -->  div classrow vt-one-headerRow>  	header classcol header-col rolebanner>      div idvt_logo>    		a classvt-logo-link hrefhttps://vt.edu>img altVT Virginia Tech srchttps://www.assets.cms.vt.edu/images/logo-maroon-whiteBG.svg/>/a>      /div>      !-- ///////////////////////////////////////////// -->      !-- MAIN NAVIGATION -->      !-- ///////////////////////////////////////////// -->      nav classcol idvt_nav aria-labelSite Menu>        div classlinkWrapper>          button classvt-nav-toggle aria-controlsvt_main_nav aria-expandedfalse onclickjavascript:navToggle();>            span classvt-nav-toggleLabel>Menu/span>            span classfar fa-bars menu-open aria-hiddentrue focusablefalse roleimg>/span>            span classfar fa-times menu-close d-none aria-hiddentrue focusablefalse roleimg>/span>          /button>        /div>        div idvt_offcanvas_nav rolegroup aria-labelMain Menu Drawer aria-hiddentrue tabindex-1>          ol idvt_parent_org classvt-parent-org aria-labelParent Organization and Current Site>            li classvt-currentSiteTitle>                a classvt-currentSiteTitle-link href/ tabindex-1>mobileOG-db/a>            /li>          /ol>          ul idvt_main_nav rolepresentation aria-labelPages in Site>              !--li classnav-item>div classlink-wrapper>/div>/li-->            li classnav-item>div classlink-wrapper>a hrefhttps://fralinlifesci.vt.edu/content/dam/fralinlifesci_vt_edu/ciwars/mobileOG-db_UserGuidance_v1.6.pdf target_blank tabindex-1>User Guide/a>/div>/li>            li classnav-item>div classlink-wrapper>a tabindex-1 href/entries/database_download>Download Database/a>/div>/li>            li classnav-item>div classlink-wrapper>a tabindex-1 hrefmailto:mobileogdbsupport@vt.edu>Contact Us/a>/div>/li>          /ul>          ul classvt-actions-nav rolemenu aria-labelActions>            li classvt-common-item>a classvt-common-link hrefhttps://vt.edu/apply.html>Apply/a>/li>            li classvt-common-item>a classvt-common-link hrefhttps://vt.edu/visit.html>Visit/a>/li>            li classvt-common-item>a classvt-common-link hrefhttps://webapps.es.vt.edu/givingto/gift>Give/a>/li>            li classvt-common-item>a classvt-common-link hrefhttp://www.hokiegear.com/?_sbm-storefront&utm_sourcevt_edu&utm_mediumreferral>Shop/a>/li>          /ul>          div classvt-resources-for-wrapper d-md-none>            div classvt-nav-resources-wrapper aria-labelAudiences>              div classvt-resources-link-wrapper>                button idvt_nav_resources_toggle classfold-icon vt-resources-toggle aria-controlsvt_nav_resources_options aria-expandedtrue>                  span classvt-nav-resources-title>Resources for/span>                  span classfar fa-times focusablefalse>/span>                /button>              /div>              ul idvt_nav_resources_options rolegroup classvt-resources-options open aria-labelledbyvt_nav_resources_toggle>                li rolenone presentation classvt-resources-item>a rolemenuitem tabindex-1 classvt-resources-item-link hrefhttps://vt.edu/admissions.html>Future Students/a>/li>                li rolenone presentation classvt-resources-item>a rolemenuitem tabindex-1 classvt-resources-item-link hrefhttps://vt.edu/resources/current-students.html>Current Students/a>/li>                li rolenone presentation classvt-resources-item>a rolemenuitem tabindex-1 classvt-resources-item-link hrefhttps://vt.edu/resources/parents-and-families.html>Parents and Families/a>/li>                li rolenone presentation classvt-resources-item>a rolemenuitem tabindex-1 classvt-resources-item-link hrefhttps://vt.edu/resources/faculty-and-staff.html>Faculty and Staff/a>/li>                li rolenone presentation classvt-resources-item>a rolemenuitem tabindex-1 classvt-resources-item-link hrefhttps://alumni.vt.edu>Alumni/a>/li>                li rolenone presentation classvt-resources-item>a rolemenuitem tabindex-1 classvt-resources-item-link hrefhttps://vt.edu/resources/industry-and-partners.html>Industry and Partners/a>/li>              /ul>            /div>          /div>          /div>          /nav>!-- end vt_nav -->          !-- ///////////////////////////////////////////// -->          !-- END MAIN NAVIGATION -->          !-- ///////////////////////////////////////////// -->      !-- ///////////////////////////////////////////// -->      !-- SEARCH -->      !-- ///////////////////////////////////////////// -->      !-- ///////////////////////////////////////////// -->      !-- END SEARCH -->      !-- ///////////////////////////////////////////// -->/div> !-- end vt_header_search -->/header>/div> !-- end vt-one-headerRow -->!-- ///////////////////////////////////////////// -->!-- END HEADER -->!-- ///////////////////////////////////////////// -->/div> !-- end header -->    nav aria-labelPage Context classvt-page-path row>    div classgateway>        ol idvt_navtrail classlong_title vt-breadcrumbs>                li classvt-breadcrumbs-item>                    a classvt-breadcrumbs-link  app_name tabindex-1 href/>mobileOG-db/a>                    span classbreadcrumb-slash> / /span>                /li>        /ol>      span classmog-version>        Data Version: Beatrix 1.6 v1      /span>    /div>/nav>    main stylemin-height: 500px; padding: 1em;>            div classcontainer home-page-intro>p>b>mobileOG-db/b> (for mobile orthologous groups) is a manually curated database of protein families mediating the integration/excision, replication/recombination/repair, stability/defense, or transfer of bacterial mobile genetic elements and phages as well as the associated transcriptional regulators of these processes. mobileOG-db was created in a process involving more than 15,000 unique manual curation events, with 1,558 references and 2,444 unique manual functional annotations at present.  Proteins were placed into one of five major mobileOG categories, representing key divisions of MGE-associated molecular machinery: Replication/Recombination/Repair (RRR), Integration/Excision (IE), Stability/transfer/defense (STD), inter-organism Transfer (T) and Phage related biological processes (P). Clicking on one of the panels below will take you to proteins falling into one of these major categories. You may also perform a search by entering terms in the Search field and pressing the Search button, or simply press the Search button to browse all entries. You can also download the entire database by following the downloads page link from the menu to the right./p>/div>div classcontainer home-page-news>h3 stylecolor: red;> News and Announcements!/h3>p>b>August 17, 2022 Update:/b> The website now documents pfam annotations for each entry and ortholog assignments and pfams for all sequences are now available in the download page. We have updated the website and database to now contain both manually curated sequences and their homologs; sequences recovered through keyword searches are available as standalone downloads. mobileOG-pl v. kyanite can be found on the database a hrefhttps://github.com/clb21565/mobileOG-db/blob/main/mobileOG-pl/UsageGuidance.md>github page/a>./p>/div> div classcontainer>  form idvt_header_search_form action/entries methodget namevtsearchform autocompleteoff>    div classvt-searchbox-input-wrapper>        label forvt_search_box classvt-search-searchboxLabel text-dark>Search/label>        input typesearch maxlength100 value nameq idvt_search_box classvt-search-box/>      button idvt_go_button typesubmit classvt-search-button>        span>Search/span>      /button>    /div>  /form>/div>hr />div classcontainer>  div classrow>    div classcol-sm stylemargin-top: 20px;>      a href/entries?major_categoryphage>img src/dev-assets/PHAGE_330w-58d3dc2084bb231fed541319a6af0045ee0d3a8679a1a124b7235be0afcaacb0.png classhome-class-image/>/a>      div classhome-class-desc>        a href/entries?major_categoryphage>b>Phage (P):/b>/a>      Phage related biological processes, including structural proteins, viral genome packaging lysis and lysogeny-associated machinery and regulatory proteins, and virus-encoded accessory factors to integration and excision, among others.      /div>    /div>    div classcol-sm stylemargin-top: 20px;>      a href/entries?major_categoryreplication/recombination/repair>img src/dev-assets/RRR_330w-93101323dad8a479e87c6e9140c3c6104e92ec94ee5b0a7911684a70621ff0a1.png classhome-class-image/>/a>      div classhome-class-desc>        a href/entries?major_categoryreplication/recombination/repair>b>Replication/recombination/repair (RRR):/b>/a>      Proteins mediating the replication, recombination, or repair of mobile genetic element nucleic acid. Includes plasmid and phage replication initiation proteins and regulators, several repair systems, and homologous recombination protein systems.      /div>    /div>    div classw-100>/div>    div classcol-sm stylemargin-top: 20px;>      a href/entries?major_categorystability/transfer/defense>img src/dev-assets/STD_330w-785cb03e6a48889212f7eb9f6b2fcacdf45f7b044e6bb6b038ba084925ff8e17.png classhome-class-image/>/a>      div classhome-class-desc>        a href/entries?major_categorystability/transfer/defense>b>Stability/transfer/defense (STD):/b>/a>        Functions related to stability or defense of element from host machinery or machinery of other elements. Includes restriction modification systems, CRISPR and anti-CRISPR proteins, and components of several anti-phage systems.      /div>    /div>    div classcol-sm stylemargin-top: 20px;>      a href/entries?major_categorytransfer>img src/dev-assets/TRANSFER_330w-a4d082bc8f4e64f200fa67876a7299e9a20f223858d2b18a43c7fa43f29ed3c9.png classhome-class-image/>/a>      div classhome-class-desc>        a href/entries?major_categorytransfer>b>Transfer (T):/b>/a>        Proteins mediating the inter-organism transfer of the element. Includes conjugation machinery like the type IV secretion system, Ftsk/SpoEIII domain-containing proteins, and proteins associated with natural transformation (competence).      /div>    /div>    div classw-100>/div>    div classcol-sm stylemargin-top: 20px;>      a href/entries?major_categoryintegration/excision>img src/dev-assets/IE_330w-9ca40445ce95ad519086434c5727dba727ef3c24a46b0eab493340cb8a38526f.png classhome-class-image/>/a>      div classhome-class-desc>        a href/entries?major_categoryintegration/excision>b>Integration/excision (IE):/b>/a>        Proteins controlling, mediating, or assisting in the site-specific recombination of mobile genetic elements. Includes tyrosine recombinases, transposases, associated transcriptional regulators, and accessory factors.      /div>    /div>    div classcol>    /div>    /div>/div>    /main>    footer>div classvt-footer-row>  div classvt-footer-info>    div classvt-embed-map>      img classvt-map-image srchttps://www.assets.cms.vt.edu/images/vt-campuses.svg longdeschttps://vt.edu/maps.html#locations altMap of Virginia with pins showing locations of Virginia Tech campuses. See All Locations link which follows provides details />  /div>    div classvt-footer-infoWrapper>      div classvt-footer-logoWrapper>        img classvt-footer-logo srchttps://www.assets.cms.vt.edu/images/logo-white-black.svg altVirginia Tech logo />      /div>      div classvt-footer-info-linkWrapper>        p classvt-footer-directions>a classfooter-info-link hrefhttps://vt.edu/maps/directions.html>Get Directions  span classfal fa-arrow-right aria-hiddentrue focusablefalse>/span>/a>/p>        p classvt-footer-locations>a classfooter-info-link hrefhttps://vt.edu/maps.html#locations>See All Locations  span classfal fa-arrow-right aria-hiddentrue focusablefalse>/span>/a>/p>      /div>    /div>  /div>  div classvt-footer-rowSpacer>/div>  div classvt-footer-links>    ul classvt-footer-linksCol>      li>a classvt-footer-link hrefhttps://vt.edu/status.html>University Status/a>/li>      li>a classvt-footer-link hrefhttps://vt.edu/contacts.html>Contact Virginia Tech/a>/li>      li>a classvt-footer-link hrefhttps://vt.edu/privacy.html>Privacy Policy/a>/li>      li>a classvt-footer-link hrefhttps://vt.edu/acceptable-use.html>Acceptable Use/a>/li>      li>a classvt-footer-link vt-remember hrefhttps://www.weremember.vt.edu/>We Remember/a>/li>      li>a classvt-footer-link hrefhttps://lib.vt.edu>University Libraries/a>/li>      li>a classvt-footer-link hrefhttps://vt.edu/accessibility.html>Accessibility/a>/li>      li>a classvt-footer-link hrefhttps://vt.edu/consumer-info.html>Consumer Information/a>/li>      li>a classvt-footer-link hrefhttps://www.stopabuse.vt.edu/>Stop Abuse/a>/li>      li>a classvt-footer-link hrefhttp://policies.vt.edu/>Policies/a>/li>      li>a classvt-footer-link hrefhttps://vt.edu/equal-opportunity.html>Equal Opportunity/a>/li>      li>a classvt-footer-link hrefhttp://www.wvtf.org/>WVTF/a>/li>      li>a classvt-footer-link hrefhttps://www.bookstore.vt.edu>University Bookstore/a>/li>      li>a classvt-footer-link hrefhttps://listings.jobs.vt.edu/>Jobs at Virginia Tech/a>/li>    /ul>  /div>/div>div classvt-footer-row vt-footer-bottom>  div idvt_footer_copyright>    p classvt-copyright>© Virginia Polytechnic Institute and State University. All rights reserved./p>  /div>  ul classfollow-virginia-tech-icons>    li>a hrefhttps://facebook.com/virginiatech target_blank aria-labelFacebook>span classfab fa-facebook-square aria-hiddentrue focusablefalse>/span>span classsr-only>Facebook/span>/a>/li>    li>a hrefhttps://twitter.com/virginia_tech target_blank aria-labelTwitter>span classfab fa-twitter aria-hiddentrue focusablefalse>/span>span classsr-only>Twitter/span>/a>/li>    li>a hrefhttps://instagram.com/virginia.tech target_blank aria-labelInstagram>span classfab fa-instagram aria-hiddentrue focusablefalse>/span>span classsr-only>Instagram/span>/a>/li>    li>a hrefhttp://www.linkedin.com/edu/school?id19611&trk target_blank aria-labelLinked In>span classfab fa-linkedin aria-hiddentrue focusablefalse>/span>span classsr-only>Linked In/span>/a>/li>    li>a hrefhttps://www.pinterest.com/imahokie/ target_blank aria-labelPintrest>span classfab fa-pinterest aria-hiddentrue focusablefalse>/span>span classsr-only>Pintrest/span>/a>/li>    li>a hrefhttps://www.youtube.com/user/VirginiaTech target_blank aria-labelYoutube>span classfab fa-youtube aria-hiddentrue focusablefalse>/span>span classsr-only>YouTube/span>/a>/li>  /ul>/div>/footer>    script srchttps://cdnjs.cloudflare.com/ajax/libs/jsrender/0.9.90/jsrender.min.js>/script>!-- ///////////////////////////////////////////// -->!-- UNIVERSAL ACCESS TEMPLATES -->!-- ///////////////////////////////////////////// -->script iduaImg typetext/x-jsrender>  img {{props attrs}}{{:key}}{{:prop}}{{/props}} />/script>script iduaSubText typetext/x-jsrender>  span {{props attrs}}{{:key}}{{:prop}}{{/props}}>    {{:text}}  /span>/script>script iduaText typetext/x-jsrender>  span {{props attrs}}{{:key}}{{:prop}}{{/props}}>    {{:text}}    {{if items}}      {{for items}}        {{include content tmpl#uaSubText/}}      {{/for}}    {{/if}}  /span>/script>script iduaButton typex-jsrender>  button {{props attrs}}{{:key}}{{:prop}}{{/props}}>      {{for items}}          {{if content.el  img}}              {{include content tmpl#uaImg/}}          {{else}}              {{include content tmpl#uaText/}}          {{/if}}      {{/for}}  /button>/script>script iduaLink typex-jsrender>  a {{props attrs}}{{:key}}{{:prop}}{{/props}}>      {{for items}}          {{if content.el  img}}              {{include content tmpl#uaImg/}}          {{else}}              {{include content tmpl#uaText/}}          {{/if}}      {{/for}}  /a>/script>script iduaMenu typex-jsrender>  {{for items}}  li {{props attrs}}{{:key}}{{:prop}}{{/props}}>      {{if content.el  a}}          {{include content tmpl#uaLink /}}      {{else}}          {{include content tmpl#uaButton /}}      {{/if}}  /li>  {{/for}}/script>script typetext/javascript>  $.ajax({    url: /uaMenu.json  }).done(function(data){    $(#uaRender).html($.templates(#uaMenu).render(data));  })/script>  /body>/html>

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