Domain > dev.phylod3.mtdna.science

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2024-11-17	13.32.151.113 (ClassC)
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HTTP/1.1 200 OKContent-Type: text/htmlContent-Length: 15029Connection: keep-aliveDate: Wed, 17 Dec 2025 15:47:51 GMTLast-Modified: Sat, 28 Jan 2023 12:43:51 GMTETag: ecd4b33ead69373ce62e126d762236f3x-amz-server-side-encryption: AES256x-amz-version-id: 2LhqzsWVEFL94Y4fHd4G9bZdHy6fq_itAccept-Ranges: bytesServer: AmazonS3X-Cache: Miss from cloudfrontVia: 1.1 bb0a0a1792594c22377eddc835c4b882.cloudfront.net (CloudFront)X-Amz-Cf-Pop: HIO52-P4X-Amz-Cf-Id: e8EZbITuVbherDz4Jx7TVeNt8hFg6S6y7rWpkrHQo36FsY98k2M8TA

!DOCTYPE html>head>    title>PhyloD3/title>    meta nameDescription contentPhyloD3 is a new, PhyloTree-based, way of navigating the Human mtDNA phylogenetic tree.>    meta nameviewport contentwidthdevice-width, initial-scale1.0>    link href//netdna.bootstrapcdn.com/bootstrap/3.1.0/css/bootstrap.min.css relstylesheet>    script defer srchttps://cdnjs.cloudflare.com/ajax/libs/d3/3.4.7/d3.min.js integritysha512-xTgDhYVOF0gUst4dDjw+CphLDemwmTuVb0UyI6o03g//pulltYxlDfDBwUfV4W4kxjpVlWi3H+PJQxrexHMv+A crossoriginanonymous referrerpolicyno-referrer>/script>script defer srcstatic/js/vendor.bundle.js>/script>script defer srcstatic/js/app.bundle.js>/script>link hrefstatic/css/vendor.css relstylesheet>link hrefstatic/css/app.css relstylesheet>/head>body>div idwrap>    div classcontainer-full-width>        div idtree-container>/div>    /div>    div idpush>/div>/div>div idfooter>    nav classnavbar navbar-default navbar-fixed-bottom navbar-inverse rolenavigation>        div classcontainer-fluid>            !-- Brand and toggle get grouped for better mobile display -->            div classnavbar-header>                button typebutton classnavbar-toggle data-togglecollapse data-target#bs-example-navbar-collapse-1>                    span classsr-only>Toggle navigation/span>                    span classicon-bar>/span>                    span classicon-bar>/span>                    span classicon-bar>/span>                /button>                a classnavbar-brand href#>PhyloD3/a>            /div>            !-- Collect the nav links, forms, and other content for toggling -->            div classcollapse navbar-collapse idbs-example-navbar-collapse-1>                ul classnav navbar-nav>                    li>a href# idhelp>Help/a>/li>                    li>a href# idabout>About/a>/li>                    li>a href# idcredits>Credits/a>/li>                /ul>                ul classnav navbar-nav navbar-right>                    li>                        form classnavbar-form navbar-right rolesearch idautocomplete_form>                            div classform-group>                                div classinput-group idsearch-bar >                                    label forsearch classsr-only>Search/label>                                    span classinput-group-addon>span classglyphicon glyphicon-search>/span>/span>                                    input typetext classform-control nameq idsearch placeholderSearch/>                                /div>                            /div>                        /form>                    /li>                    li classdropdown>                        div classbtn-group dropup navbar-right>                            button typebutton classbtn btn-primary dropdown-toggle navbar-btn data-toggledropdown>                                Options span classcaret>/span>                                span classsr-only>Toggle Dropdown/span>                            /button>                            ul classdropdown-menu>                                li>a href# idexpand>Expand all/a>/li>                                li>a href# idreset>Reset/a>/li>                            /ul>                        /div>                    /li>                /ul>            /div>!-- /.navbar-collapse -->        /div>!-- /.container-fluid -->    /nav>    div classcontainer-full-width>        !-- Modals -->        !-- Expand all confirm modal -->        div classmodal fade idexpand_modal tabindex-1 roledialog aria-labelledbyconfirm_modal_Label aria-hiddentrue>            div classmodal-dialog>                div classmodal-content>                    div classmodal-header>                        button typebutton classclose data-dismissmodal aria-hiddentrue>×/button>                        h4 classmodal-title idexpand_modalLabel>Expand the entire tree/h4>                    /div>                    div classmodal-body>                        p>You are about to expand the entire tree as provided by PhyloTree./p>                        div classalert alert-info>This operation is quite heavy and may require some time to complete./div>                    /div>                    div classmodal-footer>                        button typebutton classbtn btn-default data-dismissmodal>Close/button>                        button typebutton classbtn btn-primary idconfirm_load>Go on!/button>                    /div>                /div>            /div>        /div>        !-- Reset confirm modal -->        div classmodal fade idreset_modal tabindex-1 roledialog aria-labelledbyreset_modal_label aria-hiddentrue>            div classmodal-dialog>                div classmodal-content>                    div classmodal-header>                        button typebutton classclose data-dismissmodal aria-hiddentrue>×/button>                        h4 classmodal-title idreset_modalLabel>Reset the tree/h4>                    /div>                    div classmodal-body>                        p>Proceeding will wipe all your work and reset the application at the initial state./p>                        div classalert alert-danger text-center>This operation cannot be reverted!/div>                    /div>                    div classmodal-footer>                        button typebutton classbtn btn-default data-dismissmodal>Close/button>                        button typebutton classbtn btn-primary idconfirm_reset>Go on!/button>                    /div>                /div>            /div>        /div>        !-- Help modal -->        div classmodal fade idhelp_modal tabindex-1 roledialog aria-labelledbyreset_modal_label aria-hiddentrue>            div classmodal-dialog>                div classmodal-content>                    div classmodal-header>                        button typebutton classclose data-dismissmodal aria-hiddentrue>×/button>                        h4 classmodal-title idhelp_modalLabel>PhyloD3 Help/h4>                    /div>                    div classmodal-body>                        p>PhyloD3 allows to easily navigate through the human mtDNA phylogenetic tree as defined by a hrefhttp://www.phylotree.org relnofollow target_blank>PhyloTree/a>./p>                        p>PhyloD3 features:                        dl classdl-horizontal>                            dt>Topology/dt>                            dd>obtained directly from PhyloTree, always updated to the latest version, just for you!/dd>                            dt>Easy Navigation/dt>                            dd>navigate among PhyloTree branches, freely zooming in and out to see the tiniest detail, as you do with yours best photos./dd>                            dt>Easy Search/dt>                            dd>Search with confidence the haplogroup you need, helped by our autocompletion search bar. It will immediately appear with all its ancestors./dd>                            dt>Custom detail/dt>                            dd>Take the lead! Open and close branches just by clicking on a haplogroup node: stop the flooding, only the right data, exactly where you need them!/dd>                            dt>Graphics that matters/dt>                            dd>In PhyloD3, graphics em>do matter/em>. Collapsed haplogrups strong>with subhaplogroups/strong> are filled in blue, white otherwise. Expanded haplogroups, instead, are always white colored./dd>                            dt>Entire tree/dt>                            dd>Want to see the entire tree? Just click on the Expand all in the em>Options/em> menu./dd>                            dt>Reset/dt>                            dd>Played too much? Your tree is a mess? Reset everything to the initial state in one click thanks to Reset in the em>Options/em>./dd>                        /dl>                        /p>                        div classalert alert-info>                            PhyloD3 is still in development, so various bugs may degrade your navigation. Our commitment is to iron them out as fast as we can!                        /div>                    /div>                    div classmodal-footer>                        button typebutton classbtn btn-default data-dismissmodal>Close/button>                    /div>                /div>            /div>        /div>        !-- About -->        div classmodal fade idabout_modal tabindex-1 roledialog aria-labelledbyreset_modal_label aria-hiddentrue>            div classmodal-dialog>                div classmodal-content>                    div classmodal-header>                        button typebutton classclose data-dismissmodal aria-hiddentrue>×/button>                        h4 classmodal-title idabout_modalLabel>PhyloD3 About/h4>                    /div>                    div classmodal-body>                        p>PhyloD3 is a concept realized by a hrefhttp://www.linkedin.com/profile/view?id54531781 relnofollow target_blank>Dario Vianello/a>, @a hrefhttp://www.immunologia.unibo.it relnofollow target_blank>Immunology Lab/a> of the University of Bologna, to be presented at a hrefhttp://www.vizbi.org relnofollow target_blank>VIZBI/a> conference in March 2014./p>                        p>PhyloD3 stands for/p>                        p classtext-center lead>strong>Phylogeny/strong> em>with/em> strong>D3.js/strong>p>                        p>Human phylogeny is obtained scraping a hrefhttp://www.phylotree.org relnofollow target_blank>PhyloTree/a>, with the help of a hrefhttp://www.python.org relnofollow target_blank>Python/a> and a hrefhttp://www.crummy.com/software/BeautifulSoup/ relnofollow target_blank>BeautifulSoup/a> library./p>                        p>This Web Application is powered by:                        dl classdl-horizontal>                            dt>a hrefhttp://d3js.org relnofollow target_blank>D3.js/a>/dt>                            dd>Visualization - Navigation - Ajax calls./dd>                            dt>a hrefhttp://www.jqueryui.com relnofollow target_blank>JQuery UI/a>/dt>                            dd>Autocomplete module, to have a easier haplogroup search/selection./dd>                            dt>a hrefhttp://www.jquery.com relnofollow target_blank>JQuery/a>/dt>                            dd>The glue that keeps everything together and make the whole thing work!/dd>                            dt>a hrefhttp://getbootstrap.com/ relnofollow target_blank>Twitter Bootstrap/a>/dt>                            dd>Makes everything nice(r)./dd>                        /dl>                        p>Additional features (e.g. display mutations) may come in the future, but we do not have a defined roadmap./p>                    /div>                    div classpanel panel-info center-block idprivacy>                        div classpanel-heading>Privacy Policy/div>                        div classpanel-body>                            p>This website uses Google Analytics to track user behaviour./p>                            p>These tracking information allows us to better understand how the users interact with PhyloD3 to improve it. No data able                                to uniquely indentify you is collected in this process. /p>                        /div>                    /div>                    div classmodal-footer>                        button typebutton classbtn btn-default data-dismissmodal>Close/button>                    /div>                /div>            /div>        /div>        !-- Credits -->        div classmodal fade idcredits_modal tabindex-1 roledialog aria-labelledbyreset_modal_label aria-hiddentrue>            div classmodal-dialog>                div classmodal-content>                    div classmodal-header>                        button typebutton classclose data-dismissmodal aria-hiddentrue>×/button>                        h4 classmodal-title idcredits_modalLabel>PhyloD3 credits/h4>                    /div>                    div classmodal-body>                        p>Data shown in this application is provided by PhyloTree:/p>                        blockquote>                            p classsmall>van Oven M, Kayser M. 2009. Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Hum Mutat 30(2):E386-E394.br>a hrefhttp://www.phylotree.org relnofollow target_blank>http://www.phylotree.org/a>br>doi:10.1002/humu.20921/p>                        /blockquote>                        p>Many thanks also to Rob Schmuecker, who with this excellent blog a hrefhttp://www.robschmuecker.com/d3-js-drag-and-drop-zoomable-panning-collapsible-tree-with-auto-sizing/>post/a> paved the way for the code that is now at the basis of PhyloD3./p>                        p>Finally, a very big em>Thank you all!!/em> to all our early testers, who helped us in improving this app./p>                        div classmodal-footer>                            button typebutton classbtn btn-default data-dismissmodal>Close/button>                        /div>                    /div>                /div>            /div>        /div> !-- /.container-full-width -->    /div> !-- /.footer -->/div>/body>/html>script src//ajax.googleapis.com/ajax/libs/jquery/1.10.2/jquery.min.js>/script>script src//cdn.jsdelivr.net/jquery.cookie/1.4.0/jquery.cookie.js>/script>script src//ajax.googleapis.com/ajax/libs/jqueryui/1.10.3/jquery-ui.min.js>/script>script src//netdna.bootstrapcdn.com/bootstrap/3.1.0/js/bootstrap.min.js>/script>!-- Google tag (gtag.js) -->script async srchttps://www.googletagmanager.com/gtag/js?idG-XN80SZCDRM>/script>script>    window.dataLayer  window.dataLayer || ;    function gtag(){dataLayer.push(arguments);}    gtag(js, new Date());    gtag(config, G-XN80SZCDRM);/script>

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